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Metagenomic analysis reveals gene taxonomic and functional diversity response to microplastics and cadmium in an agricultural soil

Environmental Research 2024 37 citations

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Using advanced DNA analysis of soil microbes, researchers found that different types of microplastics (polyethylene, polystyrene, and PLA bioplastic) each had distinct effects on soil microbial communities in agricultural land. Microplastics had a greater impact on microbes than cadmium, a toxic heavy metal, and high doses of PLA bioplastic notably increased genes linked to disease-causing organisms and nitrogen metabolism. This suggests that even biodegradable plastics can significantly alter soil health in farmland.

Both microplastics (MPs) and heavy metals are common soil pollutants and can interact to generate combined toxicity to soil ecosystems, but their impact on soil microbial communities (e.g., archaea and viruses) remains poorly studied. Here, metagenomic analysis was used to explore the response of soil microbiome in an agricultural soil exposed to MPs [i.e., polyethylene (PE), polystyrene (PS), and polylactic acid (PLA)] and/or Cd. Results showed that MPs had more profound effects on microbial community composition, diversity, and gene abundances when compared to Cd or their combination. Metagenomic analysis indicated that the gene taxonomic diversity and functional diversity of microbial communities varied with MPs type and dose. MPs affected the relative abundance of major microbial phyla and genera, while their coexistence with Cd influenced dominant fungi and viruses. Nitrogen-transforming and pathogenic genera, which were more sensitive to MPs variations, could serve as the indicative taxa for MPs contamination. High-dose PLA treatments (10%, w/w) not only elevated nitrogen metabolism and pathogenic genes, but also enriched copiotrophic microbes from the Proteobacteria phylum. Overall, MPs and Cd showed minimal interactions on soil microbial communities. This study highlights the microbial shifts due to co-occurring MPs and Cd, providing evidence for understanding their environmental risks.

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