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Microbiome Composition and Function in Aquatic Vertebrates: Small Organisms Making Big Impacts on Aquatic Animal Health
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This review examines how microbiomes (communities of microorganisms) function in fish and marine mammals, and how environmental stressors like microplastics can disrupt them. Microplastics in water can alter the natural balance of beneficial microbes in aquatic animals, potentially affecting their health and the safety of seafood. Understanding these disruptions matters because changes in fish microbiomes could affect the quality and safety of the fish that end up on our plates.
Aquatic ecosystems are under increasing stress from global anthropogenic and natural changes, including climate change, eutrophication, ocean acidification, and pollution. In this critical review, we synthesize research on the microbiota of aquatic vertebrates and discuss the impact of emerging stressors on aquatic microbial communities using two case studies, that of toxic cyanobacteria and microplastics. Most studies to date are focused on host-associated microbiomes of individual organisms, however, few studies take an integrative approach to examine aquatic vertebrate microbiomes by considering both host-associated and free-living microbiota within an ecosystem. We highlight what is known about microbiota in aquatic ecosystems, with a focus on the interface between water, fish, and marine mammals. Though microbiomes in water vary with geography, temperature, depth, and other factors, core microbial functions such as primary production, nitrogen cycling, and nutrient metabolism are often conserved across aquatic environments. We outline knowledge on the composition and function of tissue-specific microbiomes in fish and marine mammals and discuss the environmental factors influencing their structure. The microbiota of aquatic mammals and fish are highly unique to species and a delicate balance between respiratory, skin, and gastrointestinal microbiota exists within the host. In aquatic vertebrates, water conditions and ecological niche are driving factors behind microbial composition and function. We also generate a comprehensive catalog of marine mammal and fish microbial genera, revealing commonalities in composition and function among aquatic species, and discuss the potential use of microbiomes as indicators of health and ecological status of aquatic ecosystems. We also discuss the importance of a focus on the functional relevance of microbial communities in relation to organism physiology and their ability to overcome stressors related to global change. Understanding the dynamic relationship between aquatic microbiota and the animals they colonize is critical for monitoring water quality and population health.
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This review examines how microplastics affect the health and microbiota of aquatic invertebrates, an area that has received less attention than fish studies. Researchers summarize evidence showing that microplastics cause toxicity at biological and molecular levels, alter microbial communities associated with invertebrate hosts, and interact with climate change and other pollutants to produce combined effects. The study highlights significant knowledge gaps and proposes future research directions for understanding microplastic impacts on aquatic ecosystems.
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This review examines the diversity and ecological roles of microbial communities in aquatic environments, covering microbiomes associated with aquatic insects, plants, fish, phytoplankton, macrophytes, and microplastics, and their interconnected functions in nutrient cycling and primary production. The authors discuss how climate change, eutrophication, and pollution are shifting microbial community composition in ways that threaten the functioning of freshwater and marine ecosystems.
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