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Microplastics reshape rhizosphere microbial communities and nutrient cycling in tomato agroecosystems

BMC Biology 2026
Yongshi Liang, Manying Zhang, Mingzhu Guan, Sijia Liu, Jiugeng Chen, Rongchao Yang, Yueqin Zhang

Summary

Tiny plastic particles from pollution are seeping into farm soil and disrupting the natural microbes that help tomato plants absorb nutrients like nitrogen and phosphorus. This research found that different types of plastic (like those from packaging and pipes) throw off soil chemistry and bacterial activity in ways that could affect how healthy and nutrient-rich our food crops grow. While this study looked at soil, not food safety directly, it adds to growing evidence that microplastic pollution may be quietly affecting the food system from the ground up.

BACKGROUND: Microplastics (MPs) are emerging soil contaminants increasingly recognized for their capacity to alter agroecosystem functioning; however, their impacts on horticultural crops and rhizosphere microbial processes remain insufficiently understood. RESULTS: We examined the impacts of MPs, polyethylene (PE), polypropylene (PP), and polyvinyl chloride (PVC), on rhizosphere soil physicochemical properties, bacterial community structure, and functional genes associated with carbon (C), nitrogen (N), and phosphorus (P) cycling in tomato (Solanum lycopersicum L.), a major horticultural crop cultivated worldwide. Both PVC-MPs and PE-MPs significantly reduced soil ammonium nitrogen and available phosphorus contents, modifying rhizosphere elemental composition. In contrast, PP-MPs had no significant effects on these nutrients but significantly increased soil pH by 0.76% compared with the control (p < 0.05). PE-MPs exposure markedly reduced bacterial α-diversity and selectively enriching bacterial taxa involved in recalcitrant organic matter degradation and nitrogen cycling. High-throughput quantitative PCR (qPCR) revealed that MPs suppressed the degradation of labile carbon substrates, including starch, cellulose, and hemicellulose (as evidenced by downregulation of apu, manB, and xylA), as well as methane metabolism, while promoting carbon fixation and phosphorus cycling. CONCLUSIONS: Our results indicate selective reprogramming of bacterial carbon metabolism, enhancing recalcitrant carbon turnover while constraining labile carbon mineralization, thereby disrupting C-P metabolic coupling and promoting soil organic carbon accumulation. Additionally, MPs stimulated nitrogen fixation and nitrification while inhibiting denitrification, particularly under PE- and PVC-MPs treatments. These findings provide bacterial ecological insights into MPs-induced reshape rhizosphere processes and nutrient cycling dynamics in horticultural systems.

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