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Metatranscriptome profile of agricultural microbial communities enriched for plastitrophy

mLife 2025
Fatai A. Olabemiwo, Yu‐Ting Huang, Mike Thompson, Hanan Omar, Siddhant Kalra, Philip Arevalo, Valerie Nazzaro, Frederick M. Cohan

Summary

Researchers used metatranscriptomic profiling of agricultural soil microbial communities enriched via a Winogradsky column with polyethylene and then minimal media with low-density polyethylene to identify novel plastic-degrading microorganisms and candidate enzymes for plastitrophic metabolism.

Polymers

This study identified potential plastic-degrading microorganisms and enzymes in agricultural soils using a novel two-phase enrichment approach. By culturing agricultural soil in a Winogradsky column supplemented with polyethylene (PE) sheets, followed by culture in minimal medium with low-density polyethylene (LDPE) microplastic, we identified 192 genes specifically upregulated in LDPE conditions, including 10 genes encoding known plastizymes and 182 genes encoding putative plastic-degrading enzymes. Detailed enzyme classification revealed predominant roles for oxygenases (20%) and dehydrogenases (19%), with specific subclasses showing distinct distribution patterns. These findings expand our understanding of microbial responses to plastics in agricultural environments and provide a foundation for developing bioremediation strategies to address plastic contamination in soils.

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