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Research data for Microplastic quantification in food samples, using stereomicroscopy and smartphone camera, leveraging interactive supervised machine learning tools - JPCE
Summary
Researchers developed and published an image analysis pipeline using stereomicroscopy and smartphone cameras combined with interactive machine learning tools to quantify microplastics in food samples, releasing raw images, trained classifier files, and processing macros to enable reproducibility of the workflow.
Research data for the article "Microplastic quantification in food samples, using stereomicroscopy and smartphone camera, leveraging interactive supervised machine learning tools". This repository contains the datasets and processing files used in the microplastic detection workflow developed in this study. The files included allow reproducibility of the image analysis pipeline. The repository contains: (i) raw microscopy images (.png) corresponding to the validation dataset used to evaluate the trained models; (ii) trained Ilastik project files (.ilp) for the two classifiers developed in this work (filament and fragment detection), which can be opened directly in the Ilastik software* to reproduce the image probability segmentation step; and (iii) FIJI macros (.ijm) used for image preprocessing and automated particle analysis in Fiji.