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Predicting Cytotoxicity of Metal Oxide Nanoparticles Using Isalos Analytics Platform
Summary
A machine learning model was developed using the Isalos Analytics Platform to predict the cytotoxicity of 24 metal oxide nanoparticles based on physicochemical, structural, and computational descriptors. The model incorporated 62 atomistic descriptors and demonstrated robust predictive performance for nanoparticle cytotoxicity without requiring additional cell-based experiments.
A literature curated dataset containing 24 distinct metal oxide (Me<sub>x</sub>O<sub>y</sub>) nanoparticles (NPs), including 15 physicochemical, structural and assay-related descriptors, was enriched with 62 atomistic computational descriptors and exploited to produce a robust and validated in silico model for prediction of NP cytotoxicity. The model can be used to predict the cytotoxicity (cell viability) of Me<sub>x</sub>O<sub>y</sub> NPs based on the colorimetric lactate dehydrogenase (LDH) assay and the luminometric adenosine triphosphate (ATP) assay, both of which quantify irreversible cell membrane damage. Out of the 77 total descriptors used, 7 were identified as being significant for induction of cytotoxicity by Me<sub>x</sub>O<sub>y</sub> NPs. These were NP core size, hydrodynamic size, assay type, exposure dose, the energy of the Me<sub>x</sub>O<sub>y</sub> conduction band (<i>E</i><sub>C</sub>), the coordination number of the metal atoms on the NP surface (Avg. C.N. Me atoms surface) and the average force vector surface normal component of all metal atoms (v⟂ Me atoms surface). The significance and effect of these descriptors is discussed to demonstrate their direct correlation with cytotoxicity. The produced model has been made publicly available by the Horizon 2020 (H2020) NanoSolveIT project and will be added to the project's Integrated Approach to Testing and Assessment (IATA).
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