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WITHDRAWN: Genome-Wide Identification and Characterization of Lipases from Ascomycetes, and Molecular Docking Analysis with Various Plastics

2024 1 citation ? Citation count from OpenAlex, updated daily. May differ slightly from the publisher's own count. Score: 35 ? 0–100 AI score estimating relevance to the microplastics field. Papers below 30 are filtered from public browse.
Zeeshan Khan, Zeeshan Khan, Zeeshan Khan, Khadija Amjad, Tariq Shah, Zeeshan Khan, Tariq Shah, Tariq Shah, Khadija Amjad, Tariq Shah, Zeeshan Khan, Tariq Shah, Tariq Shah, Tariq Shah, Khadija Amjad, Zeeshan Khan, Zeeshan Khan, Zeeshan Khan, Zeeshan Khan, Tariq Shah, Tariq Shah, Tariq Shah, Tariq Shah, Zeeshan Khan, Ghulam Haider Ghulam Haider Ghulam Haider Ghulam Haider Ghulam Haider Fazal Adnan, Fazal Adnan, Khadija Amjad, Ghulam Haider Khadija Amjad, Khadija Amjad, Khadija Amjad, Ghulam Haider Ghulam Haider Fazal Adnan, Zeeshan Sheikh, Khadija Amjad, Zeeshan Sheikh, Fazal Adnan, Ghulam Haider Muhammad Faraz Bhatti, Fazal Adnan, Muhammad Faraz Bhatti, Muhammad Faraz Bhatti, Muhammad Faraz Bhatti, Muhammad Faraz Bhatti, Ghulam Haider Ghulam Haider

Summary

Researchers performed genome-wide identification and molecular docking analysis of lipases from Ascomycete fungi to evaluate their potential for microplastic degradation in silico. The study assessed enzyme-substrate interactions with various plastic polymers to identify fungal lipases with catalytic promise as biodegradation agents, though the paper was subsequently withdrawn.

Polymers

<title>Abstract</title> The widespread utilization and inadequate management of plastic products have contributed to a significant increase of microplastics (MPs) in natural environments. MPs persist in the environment and are resistant to degradation. However, certain microorganisms possess the ability to degrade them. This study focuses on the <italic>in silico</italic> identification and molecular docking analysis of different lipases found in various fungal species, specifically aiming to assess their catalytic potential for microplastic degradation. In addition to observing enzyme-substrate interactions at the active site, hydrophobic interactions, highest binding affinity and hydrogen bonds were also examined. A total of 71 lipases were identified from 13 fungal species on the basis of presence of the lipase 3 domain. Most of the proteins were predicted to be extracellularly localized. Based on the results of molecular dockings, in terms of binding affinities, polycarbonate (PC) was found to have the highest binding affinities with all the docked proteins which suggests that it is the most biodegradable plastic type. However, polyvinyl chloride (PVC) exhibited low binding energies with all the lipases indicating its resistance against degradation via fungal lipases. Key amino acids involved in binding interactions of PC were found to be glycine, alanine and valine. The binding interactions encompass hydrogen bonding, Van der Waals forces and Pi-interactions. These findings highlighted the potential of enzymes sourced from fungal species for microplastic degradation purposes. The role of lipase in the germination of <italic>A. oryzae</italic> was also predicted under soy sauce koji fermentation. It was found that 4 proteins were upregulated whereas 4 proteins were downregulated.

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